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1.
Braz J Microbiol ; 2024 Mar 16.
Artículo en Inglés | MEDLINE | ID: mdl-38492163

RESUMEN

Natural pigments have received special attention from the market and industry as they could overcome the harm to health and the environmental issues caused by synthetic pigments. These pigments are commonly extracted from a wide range of organisms, and when added to products they can alter/add new physical-chemical or biological properties to them. Fungi from extreme environments showed to be a promising source in the search for biomolecules with antimicrobial and antiparasitic potential. This study aimed to isolate fungi from Antarctic soils and screen them for pigment production with antimicrobial and antiparasitic potential, together with other previously isolated strains A total of 52 fungi were isolated from soils in front of the Collins Glacier (Southeast border). Also, 106 filamentous fungi previously isolated from the Collins Glacier (West border) were screened for extracellular pigment production. Five strains were able to produce extracellular pigments and were identified by ITS sequencing as Talaromyces cnidii, Pseudogymnoascus shaanxiensis and Pseudogymnoascus sp. All Pseudogymnoascus spp. (SC04.P3, SC3.P3, SC122.P3 and ACF093) extracts were able to inhibit S. aureus ATCC6538 and two (SC12.P3, SC32.P3) presented activity against Leishmania (L.) infantum, Leishmania amazonensis and Trypanossoma cruzii. Extracts compounds characterization by UPLC-ESI-QToF analysis confirmed the presence of molecules with biological activity such as: Asterric acid, Violaceol, Mollicellin, Psegynamide A, Diorcinol, Thailandolide A. In conclusion, this work showed the potential of Antartic fungal strains from Collins Glacier for bioactive molecules production with activity against Gram positive bacteria and parasitic protozoas.

2.
Braz J Microbiol ; 2024 Feb 06.
Artículo en Inglés | MEDLINE | ID: mdl-38319531

RESUMEN

The mangrove ecosystem plays a crucial role in preserving the biodiversity of plants, animals, and microorganisms that are essential for materials cycles. However, the exploration of endophytic fungi isolated from mangroves, particulary in Santa Catarina (SC, Brazil), remains limited. Therefore, the purpose of this study was to assess the biodiversity of endophytic fungi found in Avicennia schaueriana, Laguncularia racemosa, Rhizophora mangle, and Spartina alterniflora from two mangroves on the Island of Santa Catarina: one impacted by anthropic action (Itacorubi mangrove) and the other environmentally preserved (Ratones mangrove). Samplings were carried out between January 2020 and May 2021. Fungi were isolated from leaves, stems, and roots, identified, and clustered into groups through morphological characteristics. Further, a representative strain of each group was identified through ITS1 sequencing. A total of 373 isolates were obtained from plant tissues, of which 96 and 277 isolates were obtained from Itacorubi and Ratones mangroves, respectively. Molecular identification showed that the endophytic fungal community comprised at least 19 genera. The data on fungal community diversity revealed comparable diversity indices for genera in both mangroves. However, we observed differences in the total frequency of fungal genera between impacted (27.38%) and non-impacted (72.62%) mangroves. These findings suggest that anthropic activities in and around the Santa Catarina mangroves have had negative impact on the frequency of endophytic fungi. This emphasizes the reinforcing the significance of preserving these environments to ensure the maintenance of fungal community diversity.

3.
Microorganisms ; 11(6)2023 Jun 16.
Artículo en Inglés | MEDLINE | ID: mdl-37375101

RESUMEN

The discovery of biomolecules has been the subject of extensive research for several years due to their potential to combat harmful pathogens that can lead to environmental contamination and infections in both humans and animals. This study aimed to identify the chemical profile of endophytic fungi, namely Neofusicoccum parvum and Buergenerula spartinae, which were isolated from Avecinnia schaueriana and Laguncularia racemosa. We identified several HPLC-MS compounds, including Ethylidene-3,39-biplumbagin, Pestauvicolactone A, Phenylalanine, 2-Isopropylmalic acid, Fusaproliferin, Sespendole, Ansellone, Calanone derivative, Terpestacin, and others. Solid-state fermentation was conducted for 14-21 days, and methanol and dichloromethane extraction were performed to obtain a crude extract. The results of our cytotoxicity assay revealed a CC50 value > 500 µg/mL, while the virucide, Trypanosoma, leishmania, and yeast assay demonstrated no inhibition. Nevertheless, the bacteriostatic assay showed a 98% reduction in Listeria monocytogenes and Escherichia coli. Our findings suggest that these endophytic fungi species with distinct chemical profiles represent a promising niche for further exploring new biomolecules.

4.
Viruses ; 15(4)2023 04 17.
Artículo en Inglés | MEDLINE | ID: mdl-37112964

RESUMEN

SARS-CoV-2 genome surveillance is important for monitoring risk groups and health workers as well as data on new cases and mortality rate due to COVID-19. We characterized the circulation of SARS-CoV-2 variants from May 2021 to April 2022 in the state of Santa Catarina, southern Brazil, and evaluated the similarity between variants present in the population and healthcare workers (HCW). A total of 5291 sequenced genomes demonstrated the circulation of 55 strains and four variants of concern (Alpha, Delta, Gamma and Omicron-sublineages BA.1 and BA.2). The number of cases was relatively low in May 2021, but the number of deaths was higher with the Gamma variant. There was a significant increase in both numbers between December 2021 and February 2022, peaking in mid-January 2022, when the Omicron variant dominated. After May 2021, two distinct variant groups (Delta and Omicron) were observed, equally distributed among the five Santa Catarina mesoregions. Moreover, from November 2021 to February 2022, similar variant profiles between HCW and the general population were observed, and a quicker shift from Delta to Omicron in HCW than in the general population. This demonstrates the importance of HCW as a sentinel group for monitoring disease trends in the general population.


Asunto(s)
COVID-19 , SARS-CoV-2 , Humanos , SARS-CoV-2/genética , COVID-19/epidemiología , Genómica , Personal de Salud
5.
Trends Parasitol ; 39(5): 332-344, 2023 05.
Artículo en Inglés | MEDLINE | ID: mdl-36933967

RESUMEN

A key morphological feature of kinetoplastid parasites is the position and length of flagellum attachment to the cell body. This lateral attachment is mediated by the flagellum attachment zone (FAZ), a large complex cytoskeletal structure, which is essential for parasite morphogenesis and pathogenicity. Despite the complexity of the FAZ only two transmembrane proteins, FLA1 and FLA1BP, are known to interact and connect the flagellum to the cell body. Across the different kinetoplastid species, each only has a single FLA/FLABP pair, except in Trypanosoma brucei and Trypanosoma congolense where there has been an expansion of these genes. Here, we focus on the selection pressure behind the evolution of the FLA/FLABP proteins and the likely impact this will have on host-parasite interactions.


Asunto(s)
Flagelos , Trypanosoma brucei brucei , Proteínas de la Membrana/metabolismo , Citoesqueleto , Trypanosoma brucei brucei/genética , Trypanosoma brucei brucei/metabolismo , Proteínas Protozoarias/genética , Proteínas Protozoarias/metabolismo
6.
Biomolecules ; 13(1)2023 01 11.
Artículo en Inglés | MEDLINE | ID: mdl-36671535

RESUMEN

Shrimp antilipopolysaccharide factors (ALFs) form a multifunctional and diverse family of antimicrobial host defense peptides (AMPs) composed of seven members (groups A to G), which differ in terms of their primary structure and biochemical properties. They are amphipathic peptides with two conserved cysteine residues stabilizing a central ß-hairpin that is understood to be the core region for their biological activities. In this study, we synthetized three linear (cysteine-free) peptides based on the amino acid sequence of the central ß-hairpin of the newly identified shrimp (Litopenaeus vannamei) ALFs from groups E to G. Unlike whole mature ALFs, the ALF-derived peptides exhibited an α-helix secondary structure. In vitro assays revealed that the synthetic peptides display a broad spectrum of activity against both Gram-positive and Gram-negative bacteria and fungi but not against the protozoan parasites Trypanosoma cruzi and Leishmania (L.) infantum. Remarkably, they displayed synergistic effects and showed the ability to permeabilize bacterial membranes, a mechanism of action of classical AMPs. Having shown low cytotoxicity to THP-1 human cells and being active against clinical multiresistant bacterial isolates, these nature-inspired peptides represent an interesting class of bioactive molecules with biotechnological potential for the development of novel therapeutics in medical sciences.


Asunto(s)
Antibacterianos , Antiinfecciosos , Humanos , Antibacterianos/farmacología , Conformación Proteica en Hélice alfa , Lipopolisacáridos/farmacología , Bacterias Gramnegativas , Bacterias Grampositivas , Antiinfecciosos/química , Péptidos Catiónicos Antimicrobianos/farmacología , Péptidos Catiónicos Antimicrobianos/química , Pruebas de Sensibilidad Microbiana
7.
Viruses ; 14(4)2022 03 27.
Artículo en Inglés | MEDLINE | ID: mdl-35458424

RESUMEN

The western mesoregion of the state of Santa Catarina (SC), Southern Brazil, was heavily affected as a whole by the COVID-19 pandemic in early 2021. This study aimed to evaluate the dynamics of the SARS-CoV-2 virus spreading patterns in the SC state from March 2020 to April 2021 using genomic surveillance. During this period, there were 23 distinct variants, including Beta and Gamma, among which the Gamma and related lineages were predominant in the second pandemic wave within SC. A regionalization of P.1-like-II in the Western SC region was observed, concomitant to the increase in cases, mortality, and the case fatality rate (CFR) index. This is the first evidence of the regionalization of the SARS-CoV-2 transmission in SC and it highlights the importance of tracking the variants, dispersion, and impact of SARS-CoV-2 on the public health systems.


Asunto(s)
COVID-19 , SARS-CoV-2 , Brasil/epidemiología , COVID-19/epidemiología , Humanos , Mutación , Pandemias , Filogenia , SARS-CoV-2/genética , Glicoproteína de la Espiga del Coronavirus/genética
8.
Exp Parasitol ; 230: 108159, 2021 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-34563508

RESUMEN

Trypanosoma rangeli is a non-virulent hemoflagellate parasite infecting humans, wild and domestic mammals in Central and Latin America. The share of genotypic, phenotypic, and biological similarities with the virulent, human-infective T. cruzi and T. brucei, allows comparative studies on mechanisms of pathogenesis. In this study, investigation of the T. rangeli Arginine Kinase (TrAK) revealed two highly similar copies of the AK gene in this taxon, and a distinct expression profile and activity between replicative and infective forms. Although TrAK expression seems stable during epimastigotes growth, the enzymatic activity increases during the exponential growth phase and decreases from the stationary phase onwards. No differences were observed in activity or expression levels of TrAK during in vitro differentiation from epimastigotes to infective forms, and no detectable AK expression was observed for blood trypomastigotes. Overexpression of TrAK by T. rangeli showed no effects on the in vitro growth pattern, differentiation to infective forms, or infectivity to mice and triatomines. Although differences in TrAK expression and activity were observed among T. rangeli strains from distinct genetic lineages, our results indicate an up-regulation during parasite replication and putative post-translational myristoylation of this enzyme. We conclude that up-regulation of TrAK activity in epimastigotes appears to improve proliferation fitness, while reduced TrAK expression in blood trypomastigotes may be related to short-term and subpatent parasitemia in mammalian hosts.


Asunto(s)
Arginina Quinasa/metabolismo , Procesamiento Proteico-Postraduccional , Trypanosoma cruzi/enzimología , Trypanosoma rangeli/enzimología , Secuencia de Aminoácidos , Animales , Arginina Quinasa/biosíntesis , Arginina Quinasa/clasificación , Arginina Quinasa/genética , Western Blotting , ADN Protozoario/aislamiento & purificación , Electroforesis en Gel Bidimensional , Femenino , Flagelos/enzimología , Técnica del Anticuerpo Fluorescente Indirecta , Ratones , Ratones Endogámicos BALB C , Filogenia , Alineación de Secuencia , Trypanosoma cruzi/clasificación , Trypanosoma cruzi/genética , Trypanosoma cruzi/patogenicidad , Trypanosoma rangeli/clasificación , Trypanosoma rangeli/genética , Trypanosoma rangeli/patogenicidad , Regulación hacia Arriba , Virulencia
9.
Rev Bras Enferm ; 74(2): e20200877, 2021.
Artículo en Inglés, Portugués | MEDLINE | ID: mdl-34037148

RESUMEN

OBJECTIVES: to describe the use of affinity chromatographies and laboratory serologies in the evaluation of immunodiagnoses during prenatal. METHODS: quantitative study, characterized as a descriptive observational research. Data was collected from the records of 46 pregnant women who were in prenatal follow up in the Primary Health Care in a capital in the South of Brazil. The data found was codified and analyzed using descriptive statistics. RESULTS: a mean of 43.1 days was found to take place between the request of laboratory serology and the evaluation by a professional. It was also found that 21.7% of pregnant women did not collect the serologies requested during the first prenatal consultation, and that the affinity chromatographies were only applied in 10.8% of the participants. CONCLUSIONS: in spite of the studies for the improvement of prenatal consultations, for the provision of new technologies and for the permanent education offered to the professionals, there are still questions that make the actual implementation of affinity chromatographies more difficult.


Asunto(s)
Laboratorios , Atención Prenatal , Brasil , Cromatografía de Afinidad , Femenino , Humanos , Pruebas Inmunológicas , Embarazo
10.
Sci Total Environ ; 778: 146198, 2021 Jul 15.
Artículo en Inglés | MEDLINE | ID: mdl-33714813

RESUMEN

Human sewage from Florianopolis (Santa Catarina, Brazil) was analyzed for severe acute respiratory syndrome coronavirus-2 (SARS-CoV2) from October 2019 until March 2020. Twenty five ml of sewage samples were clarified and viruses concentrated using a glycine buffer method coupled with polyethylene glycol precipitation, and viral RNA extracted using a commercial kit. SARS-CoV-2 RNA was detected by RT-qPCR using oligonucleotides targeting N1, S and two RdRp regions. The results of all positive samples were further confirmed by a different RT-qPCR system in an independent laboratory. S and RdRp amplicons were sequenced to confirm identity with SARS-CoV-2. Genome sequencing was performed using two strategies; a sequence-independent single-primer amplification (SISPA) approach, and by direct metagenomics using Illumina's NGS. SARS-CoV-2 RNA was detected on 27th November 2019 (5.49 ± 0.02 log10 SARS-CoV-2 genome copies (GC) L-1), detection being confirmed by an independent laboratory and genome sequencing analysis. The samples in the subsequent three events were positive by all RT-qPCR assays; these positive results were also confirmed by an independent laboratory. The average load was 5.83 ± 0.12 log10 SARS-CoV-2 GC L-1, ranging from 5.49 ± 0.02 log10 GC L-1 (27th November 2019) to 6.68 ± 0.02 log10 GC L-1 (4th March 2020). Our findings demonstrate that SARS-CoV-2 was likely circulating undetected in the community in Brazil since November 2019, earlier than the first reported case in the Americas (21st January 2020).


Asunto(s)
COVID-19 , ARN Viral , Brasil , Humanos , SARS-CoV-2 , Aguas del Alcantarillado
11.
PLoS One ; 16(2): e0246544, 2021.
Artículo en Inglés | MEDLINE | ID: mdl-33539474

RESUMEN

To minimize sample dilution effect on SARS-CoV-2 pool testing, we assessed analytical and diagnostic performance of a new methodology, namely swab pooling. In this method, swabs are pooled at the time of collection, as opposed to pooling of equal volumes from individually collected samples. Paired analysis of pooled and individual samples from 613 patients revealed 94 positive individuals. Having individual testing as reference, no false-positives or false-negatives were observed for swab pooling. In additional 18,922 patients screened with swab pooling (1,344 pools), mean Cq differences between individual and pool samples ranged from 0.1 (Cr.I. -0.98 to 1.17) to 2.09 (Cr.I. 1.24 to 2.94). Overall, 19,535 asymptomatic patients were screened using 4,400 RT-qPCR assays. This corresponds to an increase of 4.4 times in laboratory capacity and a reduction of 77% in required tests. Therefore, swab pooling represents a major alternative for reliable and large-scale screening of SARS-CoV-2 in low prevalence populations.


Asunto(s)
Prueba de Ácido Nucleico para COVID-19/métodos , COVID-19/diagnóstico , SARS-CoV-2/genética , Manejo de Especímenes/métodos , COVID-19/virología , Humanos , Tamizaje Masivo/métodos , Nasofaringe/virología , ARN Viral/análisis , ARN Viral/genética , Estudios Retrospectivos , SARS-CoV-2/aislamiento & purificación
12.
Rev. bras. enferm ; 74(2): e20200877, 2021. tab, graf
Artículo en Inglés | LILACS-Express | LILACS, BDENF - Enfermería | ID: biblio-1251156

RESUMEN

ABSTRACT Objectives: to describe the use of affinity chromatographies and laboratory serologies in the evaluation of immunodiagnoses during prenatal. Methods: quantitative study, characterized as a descriptive observational research. Data was collected from the records of 46 pregnant women who were in prenatal follow up in the Primary Health Care in a capital in the South of Brazil. The data found was codified and analyzed using descriptive statistics. Results: a mean of 43.1 days was found to take place between the request of laboratory serology and the evaluation by a professional. It was also found that 21.7% of pregnant women did not collect the serologies requested during the first prenatal consultation, and that the affinity chromatographies were only applied in 10.8% of the participants. Conclusions: in spite of the studies for the improvement of prenatal consultations, for the provision of new technologies and for the permanent education offered to the professionals, there are still questions that make the actual implementation of affinity chromatographies more difficult.


RESUMEN Objetivos: describir la utilización de los inmunocromatográficos y de las serologías laboratoriales en la evaluación de inmunodiagnósticos durante el prenatal. Métodos: estudio de abordaje cuantitativo, caracterizado como una investigación observacional del tipo descriptiva. Recogidos datos de los prontuarios de 46 gestantes que realizan acompañamiento prenatal en la Atención Primaria de Salud del Sur de Brasil. Datos obtenidos tuvieron su contenido codificado y analizados mediante estadística descriptiva. Resultados: identificada una mediana de 43,1 días desde la solicitud de las serologías laboratoriales hasta la evaluación profesional. Así, también se verificó que 21,7% de las gestantes no recogieron las serologías solicitadas durante la primera consulta prenatal y que aplicaron inmunocromatográficos en solo 10,8% de los participantes. Conclusiones: sin embargo los estudios para perfeccionamiento de consulta prenatal, provisión de nuevas tecnologías y educación permanente ofertada a los profesionales, aún persisten cuestiones que dificultan la concreta implementación de inmunocromatográficos.


RESUMO Objetivos: descrever a utilização dos testes imunocromatográficos e das sorologias laboratoriais na avaliação de imunodiagnósticos durante o pré-natal. Métodos: estudo de abordagem quantitativa, caracterizado como uma pesquisa observacional do tipo descritiva. Foram coletados dados dos prontuários de 46 gestantes que realizam acompanhamento pré-natal na Atenção Primária à Saúde de uma capital do Sul do Brasil. Os dados obtidos tiveram seu conteúdo codificado e analisados mediante estatística descritiva. Resultados: foi identificada uma média de 43,1 dias desde a solicitação das sorologias laboratoriais até a avalição profissional. Nesse sentido, também foi verificado que 21,7% das gestantes não coletaram as sorologias solicitadas durante a primeira consulta pré-natal e que foram aplicados testes imunocromatográficos em apenas 10,8% dos participantes. Conclusões: apesar dos estudos para o aprimoramento da consulta pré-natal, do fornecimento de novas tecnologias e da educação permanente ofertada aos profissionais, ainda persistem questões que dificultam a concreta implementação dos testes imunocromatográficos.

13.
Curr Genomics ; 21(4): 240-252, 2020 May.
Artículo en Inglés | MEDLINE | ID: mdl-33071618

RESUMEN

Genomic and proteomic advances in extremophile microorganism studies are increasingly demonstrating their ability to produce a variety of enzymes capable of converting biomass into bioenergy. Such microorganisms are found in environments with nutritional restrictions, anaerobic environments, high salinity, varying pH conditions and extreme natural environments such as hydrothermal vents, soda lakes, and Antarctic sediments. As extremophile microorganisms and their enzymes are found in widely disparate locations, they generate new possibilities and opportunities to explore biotechnological prospecting, including biofuels (biogas, hydrogen and ethanol) with an aim toward using multi-omics tools that shed light on biotechnological breakthroughs.

14.
Exp Parasitol ; 204: 107727, 2019 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-31344389

RESUMEN

BACKGROUND: Trypanosoma rangeli is a protozoan parasite that is non-virulent to the mammalian host and is morphologically and genomically related to Trypanosoma cruzi, whose proliferation within the mammalian host is controversially discussed. OBJECTIVES: We aimed to investigate the T. rangeli cell cycle in vitro and in vivo by characterizing the timespan of the parasite life cycle and by proposing a molecular marker to assess cytokinesis. METHODOLOGY: The morphological events and their timing during the cell cycle of T. rangeli epimastigotes were assessed using DNA staining, flagellum labelling and bromodeoxyuridine incorporation. Messenger RNA levels of four genes previously associated with the cell cycle of trypanosomatids (AUK1, PLK, MOB1 and TRACK) were evaluated in the different T. rangeli forms. FINDINGS: T. rangeli epimastigotes completed the cell cycle in vitro in 20.8 h. PLK emerged as a potential molecular marker for cell division, as its mRNA levels were significantly increased in exponentially growing epimastigotes compared with growth-arrested parasites or in vitro-differentiated trypomastigotes. PLK expression in T. rangeli can be detected near the flagellum protrusion site, reinforcing its role in the cell cycle. Interestingly, T. rangeli bloodstream trypomastigotes exhibited very low mRNA levels of PLK and were almost entirely composed of parasites in G1 phase. MAIN CONCLUSIONS: Our work is the first to describe the T. rangeli cell cycle in vitro and proposes that PLK mRNA levels could be a useful tool to investigate the T. rangeli ability to proliferate within the mammalian host bloodstream.


Asunto(s)
Proteínas de Ciclo Celular/genética , Ciclo Celular/genética , Citocinesis/fisiología , Proteínas Serina-Treonina Quinasas/genética , Proteínas Proto-Oncogénicas/genética , ARN Mensajero/análisis , Trypanosoma rangeli/citología , Animales , Bromodesoxiuridina/metabolismo , Ciclo Celular/efectos de los fármacos , Citocinesis/genética , ADN Protozoario/química , ADN Protozoario/aislamiento & purificación , Citometría de Flujo , Técnica del Anticuerpo Fluorescente , Hidroxiurea/farmacología , Ratones , Ratones Endogámicos BALB C , Inhibidores de la Síntesis del Ácido Nucleico/farmacología , ARN Protozoario/genética , ARN Protozoario/aislamiento & purificación , Factores de Tiempo , Trypanosoma rangeli/efectos de los fármacos , Trypanosoma rangeli/enzimología , Trypanosoma rangeli/genética , Tripanosomiasis/parasitología , Quinasa Tipo Polo 1
15.
Evol Bioinform Online ; 12: 263-275, 2016.
Artículo en Inglés | MEDLINE | ID: mdl-27840574

RESUMEN

Kinetoplastids are an ancestral group of protists that contains free-living species and parasites with distinct mechanisms in response to stress. Here, we compared genes involved in antioxidant defense (AD), proposing an evolution model among trypanosomatids. All genes were identified in Bodo saltans, suggesting that AD mechanisms have evolved prior to adaptation for parasitic lifestyles. While most of the monoxenous and dixenous parasites revealed minor differences from B. saltans, the endosymbiont-bearing species have an increased number of genes. The absence of these genes was mainly observed in the extracellular parasites of the genera Phytomonas and Trypanosoma. In trypanosomes, a distinction was observed between stercorarian and salivarian parasites, except for Trypanosoma rangeli. Our analyses indicate that the variability of AD among trypanosomatids at the genomic level is not solely due to the geographical isolation, being mainly related to specific adaptations of their distinct biological cycles within insect vectors and to a parasitism of a wide range of hosts.

16.
Int J Parasitol ; 45(4): 225-35, 2015 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-25592964

RESUMEN

Assessment of the genetic variability and population structure of Trypanosoma rangeli, a non-pathogenic American trypanosome, was carried out through microsatellite and single-nucleotide polymorphism analyses. Two approaches were used for microsatellite typing: data mining in expressed sequence tag /open reading frame expressed sequence tags libraries and PCR-based Isolation of Microsatellite Arrays from genomic libraries. All microsatellites found were evaluated for their abundance, frequency and usefulness as markers. Genotyping of T. rangeli strains and clones was performed for 18 loci amplified by PCR from expressed sequence tag/open reading frame expressed sequence tags libraries. The presence of single-nucleotide polymorphisms in the nuclear, multi-copy, spliced leader gene was assessed in 18 T. rangeli strains, and the results show that T. rangeli has a predominantly clonal population structure, allowing a robust phylogenetic analysis. Microsatellite typing revealed a subdivision of the KP1(-) genetic group, which may be influenced by geographical location and/or by the co-evolution of parasite and vectors occurring within the same geographical areas. The hypothesis of parasite-vector co-evolution was corroborated by single-nucleotide polymorphism analysis of the spliced leader gene. Taken together, the results suggest three T. rangeli groups: (i) the T. rangeli Amazonian group; (ii) the T. rangeli KP1(-) group; and (iii) the T. rangeli KP1(+) group. The latter two groups possibly evolved from the Amazonian group to produce KP1(+) and KP1(-) strains.


Asunto(s)
Evolución Molecular , Variación Genética , Trypanosoma rangeli/clasificación , Trypanosoma rangeli/genética , Análisis por Conglomerados , ADN Protozoario/química , ADN Protozoario/genética , Etiquetas de Secuencia Expresada , Genotipo , Repeticiones de Microsatélite , Datos de Secuencia Molecular , Filogenia , Polimorfismo de Nucleótido Simple , Análisis de Secuencia de ADN
17.
PLoS Negl Trop Dis ; 8(9): e3176, 2014 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-25233456

RESUMEN

BACKGROUND: Trypanosoma rangeli is a hemoflagellate protozoan parasite infecting humans and other wild and domestic mammals across Central and South America. It does not cause human disease, but it can be mistaken for the etiologic agent of Chagas disease, Trypanosoma cruzi. We have sequenced the T. rangeli genome to provide new tools for elucidating the distinct and intriguing biology of this species and the key pathways related to interaction with its arthropod and mammalian hosts. METHODOLOGY/PRINCIPAL FINDINGS: The T. rangeli haploid genome is ∼ 24 Mb in length, and is the smallest and least repetitive trypanosomatid genome sequenced thus far. This parasite genome has shorter subtelomeric sequences compared to those of T. cruzi and T. brucei; displays intraspecific karyotype variability and lacks minichromosomes. Of the predicted 7,613 protein coding sequences, functional annotations could be determined for 2,415, while 5,043 are hypothetical proteins, some with evidence of protein expression. 7,101 genes (93%) are shared with other trypanosomatids that infect humans. An ortholog of the dcl2 gene involved in the T. brucei RNAi pathway was found in T. rangeli, but the RNAi machinery is non-functional since the other genes in this pathway are pseudogenized. T. rangeli is highly susceptible to oxidative stress, a phenotype that may be explained by a smaller number of anti-oxidant defense enzymes and heat-shock proteins. CONCLUSIONS/SIGNIFICANCE: Phylogenetic comparison of nuclear and mitochondrial genes indicates that T. rangeli and T. cruzi are equidistant from T. brucei. In addition to revealing new aspects of trypanosome co-evolution within the vertebrate and invertebrate hosts, comparative genomic analysis with pathogenic trypanosomatids provides valuable new information that can be further explored with the aim of developing better diagnostic tools and/or therapeutic targets.


Asunto(s)
Genoma de Protozoos , Filogenia , Trypanosoma rangeli/genética , Animales , Secuencia de Bases , ADN Protozoario/genética , Haploidia , Humanos
18.
Genome Announc ; 2(1)2014 Jan 30.
Artículo en Inglés | MEDLINE | ID: mdl-24482508

RESUMEN

Trypanosoma cruzi affects millions of people worldwide. Clinical variability of Chagas disease can be due to the genetic variability of this parasite, requiring further genome studies. Here we report the genome sequence of the T. cruzi Dm28c clone (TcI), a strain related to the sylvatic cycle of the parasite.

19.
Environ Toxicol Chem ; 31(6): 1249-53, 2012 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-22505345

RESUMEN

Diesel fuel can cause adverse effects in marine invertebrates by mechanisms that are not clearly understood. The authors used suppressive subtractive hybridization to identify genes up- and downregulated in Crassostrea brasiliana exposed to diesel fuel. Genes putatively involved in protein regulation, innate immune, and stress response, were altered by diesel challenge. Three genes regulated by diesel were validated by quantitative real-time polymerase chain reaction. This study sheds light on transcriptomic responses of oysters to diesel pollution.


Asunto(s)
Crassostrea/metabolismo , Gasolina/toxicidad , Contaminantes Químicos del Agua/toxicidad , Animales , Biomarcadores/metabolismo , Crassostrea/efectos de los fármacos , Crassostrea/fisiología , Monitoreo del Ambiente , Biblioteca de Genes , Hibridación Genética
20.
Exp Parasitol ; 130(3): 246-52, 2012 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-22210157

RESUMEN

Glycoconjugates play essential roles in cell recognition, infectivity and survival of protozoan parasites within their insect vectors and mammalian hosts. ß-galactofuranose is a component of several glycoconjugates in many organisms, including a variety of trypanosomatids, but is absent in mammalian and African trypanosomes. Herein, we describe the presence of a ß(1-3) galactofuranosyl transferase (GALFT), an important enzyme of the galactofuranose biosynthetic pathway, in Trypanosoma rangeli. The T. rangeli GALFT gene (TrGALFT) has an ORF of 1.2 Kb and is organized in two copies in the T. rangeli genome. Antibodies raised against an internal fragment of the transferase demonstrated a 45 kDa protein coded by TrGALFT was localized in the whole cytoplasm, mainly in the Golgi apparatus and equally expressed in epimastigotes and trypomastigotes from T. rangeli. Despite the high sequence similarity with Trypanosoma cruzi and Leishmania spp. orthologous TrGALFT showed a substitution of the metal-binding DXD motif, conserved amongst glycosyltransferases, for a DXE functionally analogous motif. Moreover, a reduced number of GALFT genes were present in T. rangeli when compared with other pathogenic kinetoplastid species.


Asunto(s)
Galactosiltransferasas/metabolismo , Regulación Enzimológica de la Expresión Génica , Trypanosoma rangeli/enzimología , Secuencia de Aminoácidos , Animales , Western Blotting , Clonación Molecular , Electroforesis en Gel de Poliacrilamida , Técnica del Anticuerpo Fluorescente , Galactosiltransferasas/química , Galactosiltransferasas/genética , Ratones , Datos de Secuencia Molecular , Filogenia , Alineación de Secuencia , Triatominae , Trypanosoma cruzi/enzimología , Trypanosoma cruzi/genética , Trypanosoma rangeli/clasificación , Trypanosoma rangeli/genética
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